Tag Archive for distro

An in situ upgrade to Linux Mint 12

December 4, 2011 6 comments

Though it isn’t the recommended approach, I have ended up upgrading to Linux Mint 12 from Linux Mint 11 using an in situ route. Having attempted this before with a VirtualBox hosted installation, I am well aware of the possibility of things going wrong. Then, a full re-installation was needed to remedy the situation. With that in mind, I made a number of backups in the case of an emergency fresh installation of the latest release of Linux Mint. Apache and VirtualBox configuration files together with MySQL backups were put where they could be retrieved should that be required. The same applied to the list of installed packages on my system. So far, I haven’t needed to use these but there is no point in taking too many chances.

The first step in an in-situ Linux Mint upgrade is to edit /etc/apt/sources.list. In the repository location definitions, any reference to katya (11) was changed to lisa (for 12) and the same applied to any appearance of natty (Ubuntu 11.04) which needed to become oneiric (Ubuntu 11.10). With that done, it was time to issue the following command (all one line even if it is broken here):

sudo apt-get update && sudo apt-get upgrade && sudo apt-get
dist-upgrade

Once that had completed, it was time to add the new additions that come with Linux Mint 12 to my system using a combination of apt-get, aptitude and Synaptic; the process took a few cycles. GNOME already was in place from prior experimentation  so there was no need to add this anew. However, I need to instate MGSE to gain the default Linux Mint customisations of GNOME 3. Along with that, I decided to add MATE, the fork of GNOME 2. That necessitated the removal of two old libraries (libgcr0 and libgpp11, if I remember correctly but it will tell you what is causing any conflict) using Synaptic. With MGSE and MATE in place, it was time to install LightDM and its Unity greeter to get the Linux Mint login screen. Using GDM wasn’t giving a very smooth visual experience and Ubuntu, the basis of Linux Mint, uses LightDM anyway. Even using the GTK greeter with LightDM produced a clunky login box in front of a garish screen. Configuration tweaks could have improved on this but it seems that using LightDM and Unity greeter is what gives the intended set up and experience.

With all of this complete, the system seemed to be running fine until the occasional desktop freeze occurred with Banshee running. Blaming that, I changed to Rhythmbox instead though that helped only marginally. While this might be blamed on how I did the upgraded my system, things seemed to have steadied themselves in the week since then. As a test, I had the music player going for a few hours and there was no problem. With the call for testing of an update to MATE a few days ago, it now looks as if there may have been bugs in the original release of Linux Mint 12. Daily updates have added new versions of MGSE and MATE so that may have something to do with the increase in stability. Even so, I haven’t discounted the possibility of needing to do a fresh installation of Linux Mint 12 just yet. However, if things continue as they are, then it won’t be needed and that’s an upheaval avoided should things go that way. That’s why in situ upgrades are attractive though rolling distros like Arch Linux (these words are being written on a system running this) and LMDE are moreso.

Linux, Software

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Sorting out MySQL on Arch Linux

November 5, 2011 No comments

Seeing Arch Linux running so solidly in a VirtualBox virtual box has me contemplating whether I should have it installed on a real PC. Saying that, recent announcements regarding the implementation of GNOME 3 in Linux Mint have caught my interest even if the idea of using a rolling distribution as my main home operating system still has a lot of appeal for me. Having an upheaval come my way every six months when a new version of Linux Mint is released is the main cause of that.

While remaining undecided, I continue to evaluate the idea of Arch Linux acting as my main OS for day-to-day home computing. Towards that end, I have set up a working web server instance on there using the usual combination of Apache, Perl, PHP and MySQL. Of these, it was MySQL that went the least smoothly of all because the daemon wouldn’t start for me.

It was then that I started to turn to Google for inspiration and a range of actions resulted that combined to give the result that I wanted. One problem was a lack of disk space caused by months of software upgrades. Since tools like it in other Linux distros allow you to clear some disk space of obsolete installation files, I decided to see if it was possible to do the same with pacman, the Arch Linux command line package manager. The following command, executed as root, cleared about 2 GB of cruft for me:

pacman -Sc

The S in the switch tells pacman to perform package database synchronization while the c instructs it to clear its cache of obsolete packages. In fact, using the following command as root every time an update is performed both updates software and removes redundant or outmoded packages:

pacman -Syuc

So I don’t forget the needful housekeeping, this will be what I use in future with the y being the switch for a refresh and the u triggering a system upgrade. It’s nice to have everything happen together without too much effort.

To do the required debugging that led me to the above along with other things, I issued the following command:

mysqld_safe –datadir=/var/lib/mysql/ &

This starts up the MySQL daemon in safe mode if all is working properly and it wasn’t in my case. Nevertheless, it creates a useful log file called myhost.err in /var/lib/mysql/. This gave me the messages that allowed the debugging of what was happening. It led me to installing net-tools and inettools using pacman; it was the latter of these that put hostname on my system and got the MySQL server startup a little further along. Other actions included unlocking the ibdata1 data file and removing the ib_logfile0 and ib_logfile1 files so as to gain something of a clean sheet. The kill command was used to shut down any lingering mysqld sessions too. To ensure that the ibdata1 file was unlocked, I executed the following commands:

mv ibdata1 ibdata1.bad
cp -a ibdata1.bad ibdata1

These renamed the original and then crated a new duplicate of it with the -a switch on the cp command forcing copying with greater integrity than normal. Along with the various file operations, I also created a link to my.cnf, the MySQL configuration file on Linux systems, in /etc using the following command executed by root:

ln -s /etc/mysql/ my.cnf /etc/my.cnf

While I am unsure if this made a real difference, uncommenting the lines in the same file that pertained to InnoDB tables. What directed me to these were complaints from mysqld_safe in the myhost.err log file. All I did was to uncomment the lines beginning with “innodb” and these were 116-118, 121-122 and 124-127 in my configuration file but it may be different in yours.

After all the above, the MySQL daemon ran happily and, more importantly, started when I rebooted the virtual machine. Thinking about it now, I believe that was a lack of disk space, the locking of a data file and the lack of InnoDB support that was stopping the MySQL service from running.Running commands like mysqld start weren’t yielding useful messages so a lot of digging was needed to get the result that I needed. In fact, that’s one of the reasons why I am sharing my experiences here.

In the end, creating databases and loading them with data was all that was needed for me to start see functioning websites on my (virtual) Arch Linux system. It turned out to be another step on the way to making it workable as a potential replacement for the Linux distributions that I use most often (Linux Mint, Fedora and Ubuntu).

Databases, Linux, Software, Virtualisation, Web Technologies, Web Tools

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Improving Font Display in Fedora 15

May 30, 2011 One comment

When I first started to poke around Fedora 15 after upgrading my Fedora machine, the definition of the font display was far from being acceptable to me. Thankfully, it was something that I could resolve and I am writing these words with the letters forming them being shown in a way that was acceptable to me. The main thing that I did to achieve this was to add a file named 99-autohinter-only.conf in the folder /etc/fonts/conf.d. The file contains the following:

<?xml version=”1.0″?>
<!DOCTYPE fontconfig SYSTEM “fonts.dtd”>
<fontconfig>
<match target=”font”>
<edit name=”autohint” mode=”assign”>
<bool>true</bool>
</edit>
</match>
</fontconfig>

This forces autohinting for all fonts so that text looks better than it otherwise would. Apparently, Fedora 15 has seen the incorporation of the TrueType bytecode interpreter (BCI) into FreeType now that its patent has expired. To my eyes, this has worsened font rendering so I incorporated the above from a post by Kevin Kofler and it seems to have done the trick for me. However, I also have added the GNOME Tweak Tool and that allows you to alter the autohinting settings too so it may be a combination of the two actions that has helped. Anything that helps rendering of letters like k only can be a good thing. Another Linux distribution whose font rendering has not satisfied me is openSUSE and I am now set to wondering if the same approach would help there too, albeit without the GNOME Tweak Tool until a GNOME 3 version of that distro comes to fruition.

Linux, Software

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GNOME 3 in Fedora 15: A Case of Acclimatisation and Configuration

May 29, 2011 8 comments

When I gave the beta version of the now finally released Fedora 15 a try, GNOME 3 left me thinking that it was even more dramatic and less desirable a change than Ubuntu’s Unity desktop interface. In fact, I was left with serious questions about its actual usability, even for someone like me. It all felt as if everything was one click further away from me and thoughts of what this could mean for anyone seriously afflicted by RSI started to surface in my mind, especially with big screens like my 24″ Iiyama being commonplace these days. Another missing item was somewhere on the desktop interface for shutting down or restarting a PC; it seemed to be case of first logging off and then shutting down from the login screen. This was yet another case of adding to the number of steps for doing something between GNOME 2 and GNOME 3 with its GNOME Shell.

After that less than positive experience with a Live CD, you’d be forgiven for thinking that I’d be giving the GNOME edition of Fedora 15 a wide berth with the LXDE one being chosen in its place. Another alternative approach would have been to turn off GNOME Shell altogether by forcing the fallback mode to run all the time. The way to do this is start up the System Settings application and click on the System Info icon. Once in there, click on Graphics and turn on the Forced Fallback Mode option. With that done, closing down the application, logging off and then back on again will gain you an environment not dissimilar to the GNOME 2 of Fedora 14 and its forbears.

Even after considering the above easy way to get away from and maybe even avoid the world of GNOME Shell, I still decided to give it another go to see if I could make it work in a way that was less alien to me. After looking at the handy quickstart guide, I ventured into the world of GNOME Shell extensions and very useful these have come to be too. The first of these that I added was the Alternate Status Menu and I ran the following command to do so:

yum install gnome-shell-extensions-alternative-status-menu

The result was that the “me” menu gained the ever useful “Power Off…” entry that I was seeking once I refreshed the desktop by running the command r in the command entry box produced by the ALT + F2 keyboard combination. Next up was the Place Menu and the command used to add that is:

yum install gnome-shell-extensions-place-menu

Again, refreshing the desktop as described for the Alternate Status Menu added the new menu to the (top) panel. Not having an application dock on screen all the time was the next irritation that was obliterated and it helps to get around the lack of a workspace switcher for now too. The GNOME Shell approach to virtual desktops is to have a dynamic number of workspaces with there always being one more than what you are using. It’s an interesting way of working that doesn’t perturb more pragmatic users like me but there are those accustomed to tying applications to particular workspaces aren’t so impressed by the change. The other change to workspace handling is that keyboard shortcuts have changed to CTRL-ALT-[Up Arrow] and CTRL-ALT-[Down Arrow] from CTRL-ALT-[Left Arrow] and CTRL-ALT-[Right Arrow].

To add that application dock, I issued the command below and refreshed the desktop to get it showing. Though it stops application windows becoming fully maximised on the screen, that’s not a problem with my widescreen monitor. In fact, it even helps to switch between workspaces using the keyboard because that doesn’t seem to be working when you have fully maximised windows.

yum install gnome-shell-extensions-dock

After adding the application dock, I stopped adding extensions though there are more available such as Alternate Tab Behaviour (restores the ALT-TAB behaviour of GNOME 2), Auto Move Windows, Drive Menu, Native Window Placement, Theme Selector and Window Navigator. Here are the YUM commands for each of these in turn:

yum install gnome-shell-extensions-alternate-tab
yum install gnome-shell-extensions-auto-move-windows
yum install gnome-shell-extensions-drive-menu
yum install gnome-shell-extensions-native-window-placement
yum install gnome-shell-extensions-theme-selector
yum install gnome-shell-extensions-user-theme
yum install gnome-shell-extensions-windowsNavigator

One hope that I will retain is that more of these extensions will appear over time but Ranjith Siji seems to have a good round up of what is available. Other than these, I also have added the DCONF Editor and GNOME Tweaks Tool with the latter restoring buttons for minimising and maximising windows to their title bars for me. As ever, YUM was called to add them using the following commands:

yum install dconf-editor
yum install gnome-tweaks-tool

There are other things that can be done with these but I haven’t to explore them yet. All YUM commands were run as root and the ones that I used certainly have helped me to make myself at home in what once was a very unfamiliar desktop environment for me. In fact, I am beginning to like what has be done with GNOME 3 though I have doubts as to how attractive it would be to a user coming to Linux from the world of Windows. While everything is solidly crafted, the fact that I needed to make some customisations of my own raises questions about how suitable the default GNOME set-up in Fedora is for a new user though Fedora probably isn’t intended for that user group anyway. Things get more interesting when you consider distros favouring new and less technical users, both of whom need to be served anyway.

Ubuntu has gone its own way with Unity and, having spent time with GNOME 3, I can see why they might have done that. Unity does put a lot more near at hand on the desktop than is the case with GNOME 3 where you find yourself going to the Activities window a lot, either by using your mouse or by keystrokes like the “super” (or Windows) key or ALT-F1. Even so, there are common touches like searching for an application like you would search a web page in Firefox. In retrospect, it is a pity to see the divergence when something from both camps might have helped for a better user experience. Nevertheless, I am reaching the conclusion that the Unity approach feels like a compromise and that GNOME feels that little bit more polished. Saying that, an extra extension or two put more items nearer to hand in GNOME Shell would be desirable. If I hadn’t found a haven like Linux Mint where big interface changes are going to be avoided, maybe going with the new GNOME desktop mightn’t have been a bad thing to do after all.

Linux, Software

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A look at Slackware 13.0

June 5, 2010 2 comments

Some curiosity has come upon me and I have been giving a few Linux distros a spin in fVirtualBox virtual machines. One was Slackware and I recall a fellow university student using it in the mid/late 1990′s. Since then, my exploration took me into Redhat, SuSE, Mandrake and eventually to Ubuntu, Debian and Fedora. All of that bypassed Slackware so it was to give the thing a look.

While the current version is 13.1, it was 13.0 that I had to hand so I had a go with that. In many ways, the installation was a flashback to the 1990′s and I can see it looking intimidating to many computer users with its now old-fashioned installation GUI. If you can see through that though, the reality is that it isn’t too hard to install.

After all, the DVD was bootable. However, it did leave you at a command prompt and I can see that throwing many. The next step is to use cfdisk to create partitions (at least two are needed, swap and normal). Once that is done, it is time to issue the command setup and things look more graphical again. I picked the item for setting the locale of the keyboard and everything followed from there but there is a help option too for those who need it. If you have installed Linux before, you’ll recognise a lot of what you see. It’ll finish off the set up of disk partitions for you and supports ext4 too; it’s best not to let antique impressions fool you. For most of the time, I stuck with defaults and left it to perform a full installation with KDE as the desktop environment. If there is any real criticism, it is the absence of an overall progress bar to see where it is with package installation.

Once the installation was complete, it was time to restart the virtual machine and I found myself left at the command prompt. Only the root user was set up during installation so I needed to add a normal user too. Issuing startx was enough to get me into KDE (along with included alternatives like XCFE, there is a community build using GNOME too) for that but I wanted to have that loading automatically. To fix that, you need to edit /etc/inittab to change the default run level from 3 to 4 (hint: look for a line with id:3:initdefault: in it near the top of the file and change that; the file is well commented so you can find your way around it easily without having to look for specific esoteric test strings).

After all this, I ended up with a usable Slackware 130.0 installation. Login screens have a pleasing dark theme by default while the desktop is very blue. There may be no OpenOffice but KOffice is there in its place and Seamonkey is an unusual inclusion along with Firefox. It looks as if it’ll take a little more time to get to know Slackware but it looks good so far; I may even go about getting 13.1 to see how things might have changed and report my impressions accordingly. Some will complain about the rough edges that I describe here but comments about using Slackware to learn about Linux persist. Maybe, Linux distributions are like camera film; some are right for you and some aren’t. Personally, I wouldn’t thrust Slackware upon a new Linux user if they have to install it themselves but it’s not at all bad for that.

Linux, Software, Virtualisation

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Relocating the Apache web server document root directory in Fedora 12

April 9, 2010 No comments

So as not to deface anything that is available online on the web, I have a tendency to set up an offline Apache server on a home PC to do any tinkering away from the eyes of the unsuspecting public. Though Ubuntu is my mainstay for home computing, I do have a PC with Fedora installed and I have been trying to get an Apache instance starting automatically on there without success for a few months. While I can start it by running the following command as root, I’d rather not have more manual steps than is necessary.

httpd -k start

The command used by the system when it starts is different and, even when manually run as root, it failed with messages saying that it couldn’t find the directory while the web server files are stored. Here it is:

service httpd start

The default document root location on any Linux distribution that I have seen is /var/www and all is very well with this but it isn’t a safe place to leave things if ever a re-installation is needed. Having needed to wipe /var after having it on a separate disk or partition for the sake of one installation, it doesn’t look so persistent to me. In contrast, you can safeguard /home by having it on another disk or in a dedicated partition and it can be retained even when you change the distro that you’re using. Thus, I have got into the habit of having the root of the web server document root folder in my home area and that is where I have been seeing the problem.

Because of the access message, I tried using chmod and chgrp but to no avail. The remedy has to do with reassigning the security contexts used by SELinux. In Fedora, Apache will not work with the context user_home_t that is usually associated with home directories but needs httpd_sys_content_t instead. To find out what contexts are associated with particular folders, issue the following command:

ls -Z

The final solution was to create a user account whose home directory hosts the root of the web server file system, called www in my case. Then, I executed the following command as root to get things going:

chcon -R -h -t httpd_sys_content_t /home/www

It seems that even the root of the home directory has to have an appropriate security context (/home has home_root_t so that might do the needful too). Without that, nothing will work even if all is well at the next level down. The switches for chcon command translate as follows:

-R : recursive; applies changes to all files and folders within a directory.

-h : changes apply only to symbolic links and not to where they refer in the file system.

-t : alters context type.

It took a while for all of this stuff about SELinux security contexts to percolate through to the point where I was able to solve the problem. A spot of further inspiration was needed too and even guided my search for the information that I needed. It’s well worth trying Linux Home Networking if you need more information. There are references to an earlier release of Fedora but the content still applies to later versions of Fedora right up to the current release if my experience is typical.

Linux, Security, Software, Web Development

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