Technology Tales

Uninstalling VirtualBox Guest Additions on a Linux Guest OS

Within the last few days, I updated my Linux Mint Debian Edition virtual machine installation to Update 4. Between not following the instructions so closely and problems with the update server, a re-installation preceded the update itself. When all was done, no desktop environment appeared, and issuing the startx command revealed that it was one of the VirtualBox drivers that was the cause of the problem. With my being unable to see any files on the VirtualBox virtual CD, something else needed doing and the executing following command (replacing [VboxAddonsFolder] with VBoxGuestAdditions-4.1.12 in my case, but it is different for each VirtualBox version) resolved the situation:

/opt/[VboxAddonsFolder]/uninstall.sh

When it was complete, a scrambled desktop began to appear, so a reboot was to set things to rights. Then, I could set to looking at what Update 4 had brought to Linux Mint Debian Edition.

Getting Gnome Shell going for Fedora 16 running in VirtualBox

There are a number of complaints out there about how hard it is to get GNOME Shell running for a Fedora 16 installation in a VirtualBox virtual machine. As with earlier versions of Fedora, preparation remains a matter of having make, gcc and kernel-devel (kernel headers, in other words). While I have got away with just those, adding dkms (dynamic kernel module support) to the list might be no bad idea either. To get all of those instated, it is a matter of running the following command as root or using sudo:

yum -y install make gcc kernel-devel dkms

The -y switch ensures that any Y/N prompts that usually appear are suppressed and that the installation is completed. Just leave it out if you are inclined to get second thoughts. Another item that has been needed with a previous release of Fedora is libgomp, but I haven't had to add this for Fedora 16 if I recall correctly.

Once those are in place, it is time to install the VirtualBox Guest Additions.  Going to Devices > Install Guest Additions... mounts a virtual CD that can be used for the installation of the various drivers that are needed. To do the installation, first go to where the installer is located using the following command:

cd /media/VBOXADDITIONS_4.1.6_74713/

Note that this location will change according to the release and build numbers of VirtualBox, yet the process essentially will be the same aside from this. Once in there, issue the following command as root or using sudo:

./VBoxLinuxAdditions.run

Hopefully, this will complete without errors now with the precursor software that has been added beforehand. However, there is one more thing that needs doing, or you will get the GNOME 3 fallback desktop instead. It pertains to SELinux, an old adversary of mine that got in the way when I was setting up a web server on a machine running Fedora. It doesn't recognise the new VirtualBox drivers as it should, so the following command needs executing as root or using sudo:

restorecon -R -v /opt

Doing this restores the SELinux contexts for the /opt directories within which the VirtualBox software directories are found. The -R switch tells it to act recursively and -v makes it verbose. When it has done its work, hopefully successfully, it is time to reboot the virtual machine, and you should have a GNOME Shell desktop interface when you log in.

An in situ upgrade to Linux Mint 12

Though it isn't the recommended approach, I have ended up upgrading to Linux Mint 12 from Linux Mint 11 using an in situ route. Having attempted this before with a VirtualBox hosted installation, I am well aware of the possibility of things going wrong. Then, a full re-installation was needed to remedy the situation. With that in mind, I made a number of backups in the case of an emergency fresh installation of the latest release of Linux Mint. Apache and VirtualBox configuration files together with MySQL backups were put where they could be retrieved should that be required. The same applied to the list of installed packages on my system. So far, I haven't needed to use these, but there is no point in taking too many chances.

The first step in an in-situ Linux Mint upgrade is to edit /etc/apt/sources.list. In the repository location definitions, any reference to katya (11) was changed to lisa (for 12) and the same applied to any appearance of natty (Ubuntu 11.04) which needed to become oneiric (Ubuntu 11.10). With that done, it was time to issue the following command:

sudo apt-get update && sudo apt-get upgrade && sudo apt-get dist-upgrade

Once that had completed, it was time to add the new additions that come with Linux Mint 12 to my system using a combination of apt-get, aptitude and Synaptic; the process took a few cycles. GNOME already was in place from prior experimentation, so there was no need to add this anew. However, I need to instate MGSE to gain the default Linux Mint customisations of GNOME 3. Along with that, I decided to add MATE, the fork of GNOME 2. That necessitated the removal of two old libraries (libgcr0 and libgpp11, if I recall correctly, which will tell you what is causing any conflict) using Synaptic. With MGSE and MATE in place, it was time to install LightDM and its Unity greeter to get the Linux Mint login screen. Using GDM wasn't giving a very smooth visual experience and Ubuntu, the basis of Linux Mint, uses LightDM anyway. Even using the GTK greeter with LightDM produced a clunky login box in front of a garish screen. Configuration tweaks could have improved on this, but it appears that using LightDM and Unity greeter is what gives the intended setup and experience.

With all of this complete, the system seemed to be running fine until the occasional desktop freeze occurred with Banshee running. Blaming that, I changed to Rhythmbox instead, though that helped only marginally. While this might be blamed on how I upgraded my system, things seemed to have steadied themselves in the week since then. As a test, I had the music player going for a few hours and there was no problem. With the call for testing of an update to MATE a few days ago, it now looks as if there may have been bugs in the original release of Linux Mint 12. Daily updates have added new versions of MGSE and MATE, so that may have something to do with the increase in stability. Even so, I haven't discounted the possibility of needing to do a fresh installation of Linux Mint 12 just yet. However, if things continue as they are, then it won't be needed and that's an upheaval avoided should things go that way. That's why in situ upgrades are attractive, though rolling distros like Arch Linux (these words are being written on a system running this) and LMDE are more so.

Sorting out MySQL on Arch Linux

Seeing Arch Linux running so solidly in a VirtualBox virtual box has me contemplating whether I should have it installed on a real PC. Saying that, recent announcements regarding the implementation of GNOME 3 in Linux Mint have caught my interest, even if the idea of using a rolling distribution as my main home operating system still has a lot of appeal for me. Having an upheaval come my way every six months when a new version of Linux Mint is released is the main cause of that.

While remaining undecided, I continue to evaluate the idea of Arch Linux acting as my main OS for day-to-day home computing. Towards that end, I have set up a working web server instance on there using the usual combination of Apache, Perl, PHP and MySQL. Of these, it was MySQL that went the least smoothly of all because the daemon wouldn't start for me.

It was then that I started to turn to Google for inspiration, and a range of actions resulted that combined to give the result that I wanted. One problem was a lack of disk space caused by months of software upgrades. Since tools like it in other Linux distros allow you to clear some disk space of obsolete installation files, I decided to see if it was possible to do the same with pacman, the Arch Linux command line package manager. The following command, executed as root, cleared about 2 GB of cruft for me:

pacman -Sc

The S in the switch tells pacman to perform package database synchronization, while the c instructs it to clear its cache of obsolete packages. In fact, using the following command as root every time an update is performed both updates software and removes redundant or outmoded packages:

pacman -Syuc

So I don't forget the needful housekeeping, this will be what I use from this point forward, with y being the switch for a refresh and u triggering a system upgrade. It's nice to have everything happen together without too much effort.

To do the required debugging that led me to the above along with other things, I issued the following command:

mysqld_safe --datadir=/var/lib/mysql/ &

This starts up the MySQL daemon in safe mode if all is working properly, and it wasn't in my case. Nevertheless, it creates a useful log file called myhost.err in /var/lib/mysql/. This gave me the messages that allowed the debugging of what was happening. It led me to installing net-tools and inettools using pacman; it was the latter of these that put hostname on my system and got the MySQL server startup a little further along. Other actions included unlocking the ibdata1 data file and removing the ib_logfile0 and ib_logfile1 files to gain something of a clean sheet. The kill command was used to shut down any lingering mysqld sessions too. To ensure that the ibdata1 file was unlocked, I executed the following commands:

mv ibdata1 ibdata1.bad
cp -a ibdata1.bad ibdata1

These renamed the original and then crafted a new duplicate of it, with the -a switch on the cp command forcing copying with greater integrity than normal. Along with the various file operations, I also created a link to my.cnf, the MySQL configuration file on Linux systems, in /etc using the following command executed by root:

ln -s /etc/mysql/ my.cnf /etc/my.cnf

While I am unsure if this made a real difference, uncommenting the lines in the same file that pertained to InnoDB tables. What directed me to these were complaints from mysqld_safe in the myhost.err log file. All I did was to uncomment the lines beginning with innodb and these were 116-118, 121-122 and 124-127 in my configuration file, but it may be different in yours.

After all the above, the MySQL daemon ran happily and, more importantly, started when I rebooted the virtual machine. Thinking about it now, I believe that it was a lack of disk space, the locking of a data file and the lack of InnoDB support that was stopping the MySQL service from running. Running commands like mysqld start weren't yielding useful messages, so a lot of digging was needed to get the result that I needed. In fact, that's one of the reasons why I am sharing my experiences here.

In the end, creating databases and loading them with data were all that was needed for me to start to see functioning websites on my (virtual) Arch Linux system. It turned out to be another step on the way to making it workable as a potential replacement for the Linux distributions that I use most often (Linux Mint, Fedora and Ubuntu).

All Change?

Could 2011 be remembered as the year when the desktop computing interface got a major overhaul? One part of this, Windows 8, won't be with us until next year, but there has been enough happening so far this year that has resulted in a lot of comment. With many if not all the changes, it is possible to detect the influence of interfaces used on smartphones. After all, the carry-over from Windows Phone 7 to the new Metro interface is unmistakeable.

Two developments in the Linux world have spawned a hell of an amount of comment: Canonical's decision to develop Unity for Ubuntu and the arrival of GNOME 3. While there have been many complaints about the changes made in both, there must be a fair few folk who are just getting on with using them without complaint. Maybe there are many who even quietly like the new interfaces. While I am not so sure about Unity, I surprised myself by taking to GNOME Shell so much that I installed it on Linux Mint. It remains a work in progress, as does Unity, but it'll be very interesting to see it mature. Perhaps a good number of the growing collection of GNOME Shell plugins could make it into the main codebase. If that were to happen, I could see it being welcomed by a good few folk.

There was little doubt that the changes in GNOME 3 looked daunting, so Ubuntu's taking a different approach is understandable until you come to realise how change that involves anyway. With GNOME 3 working so well for me, I feel disinclined to dally very much with Unity at all. In fact, I am writing these words on a Toshiba laptop running UGR, effectively Ubuntu running GNOME 3, and that could become my main home computing operating system in time.

For those who find these changes not to their taste, there are alternatives. Some Linux distributions are sticking with GNOME 2 as long as they can, and there apparently has been some mention of a fork to keep a GNOME 2 interface available indefinitely. However, there are other possibilities such as LXDE and XFCE out there too. In fact, until GNOME 3 won me over, LXDE was coming to mind as a place of safety until I learned that Linux Mint was retaining its desktop identity. As always, there's KDE too, but I have never warmed to that for some reason.

The latest version of OS X, Lion, also included some changes inspired by iOS, the operating system that powers both the iPhone and iPad. However, while the current edition of PC Pro highlights some disgruntlement in professional circles regarding Apple's direction, this does not seem to have aroused the kind of ire that has been abroad in the world of Linux. Is it because Linux users want to feel that they are in charge and that iMac and MacBook users are content to have decisions made for them so long as everything just works? Speaking for myself, the former description seems to fit me, though having choices means that I can reject decisions that I do not like so much.

At the time of writing, the release of a developer preview of the next version of Windows has been generating a lot of attention. It also appears that changes are headed for Windows users too. However, I get the sense that a more conservative interface option will be retained and that could be essential for avoiding the alienation of corporate users. After all, I cannot see the Metro interface gaining much favour in the working environment when so many of us have so much to do. Nevertheless, I plan to get my hands on the developer preview to have a look (the weekend proved too short for this). It will be very interesting to see how the next version of Windows develops, and I plan to keep an eye on it as it does so.

It now looks as if many will have their work cut out if they are to avoid where desktop computing interfaces are going. Established paradigms are being questioned, particularly as a result of touch interfaces on smartphones and tablets. Wii and Kinect have involved other ways of interacting with computers, too, so there's a lot of mileage in rethinking how we work with computers. So far, I have been able to deal with the changes in the world of Linux, but I am left wondering about the changes that Microsoft is making. After Vista, they need to be careful and they know that. Maybe, they'll be better at getting users through changes in computing interfaces than others, but it'll be very interesting to see what happens. Unlike open source community projects, they have the survival of a massive multinational at stake.

Setting up GNOME 3 on Arch Linux

It must have been my curiosity that drove me to explore Arch Linux a few weeks ago. Its inclusion on a Linux Format DVD and a few kind words about its being a cutting edge distribution were enough to set me installing it into a VirtualBox virtual machine for a spot of investigation. Despite warnings to the contrary, I took the path of least resistance with the installation, even though I did look among the packages to see if I could select a desktop environment to be added as well. Not finding anything like GNOME in there, I left everything as defaulted and ended up with a command line interface, as I suspected. The next job was to use the pacman command to add the extras that were needed to set in place a fully functioning desktop.

For this, the Arch Linux wiki is a copious source of information, even if it didn't stop me doing things out of sequence. That I didn't go about perusing it linearly was part of the cause of this, but you have to know which place to start first as well. As a result, I have decided to draw everything together here so that it's all in one place and in a more sensible order, even if it wasn't the one that I followed.

The first thing to do is add X.org using the following command:

pacman -Syu xorg-server

The -Syu switch tells pacman to update the package list, upgrade any packages that require it, and adds the listed package if it isn't in place already; that's X.org in this case. For my testing, I added xor-xinit too. This puts that startx command in place. This is the command for adding it:

pacman -S xorg-xinit

With those in place, I would add the VirtualBox Guest Additions next. GNOME Shell requires 3D capability, so you need to have this done while the machine is off or when setting it up in the first place. This command will add the required VirtualBox extensions:

pacman -Syu virtualbox-guest-additions

Once that's done, you need to edit /etc/rc.conf by adding vboxguest vboxsf vboxvideo within the brackets on the MODULES line and adding rc.vboxadd within the brackets on the DAEMONS line. On restarting, everything should be available to you, but the modprobe command is there for any troubleshooting.

With the above pre-work done, you can set to installing GNOME, and I added the basic desktop from the gnome package and the other GNOME applications from the gnome-extra one. GDM is the login screen manager, so that's needed too, and the GNOME Tweak Tool is a very handy thing to have for changing settings that you otherwise couldn't. Here are the commands that I used to add all of these:

pacman -Syu gnome
pacman -Syu gnome-extra
pacman -Syu gdm
pacman -Syu gnome-tweak-tool

With those in place, some configuration files were edited so that a GUI was on show instead of a black screen with a command prompt, as useful as that can be. The first of these was /etc/rc.conf where dbus was added within the brackets on the DAEMONS line and fuse was added between those on the MODULES one.

Creating a file named .xinitrc in the root home area with the following line to that file makes running a GNOME session from issuing a startx command:

exec ck-launch-session gnome-session

With all those in place, all that was needed to get a GNOME 3 login screen was a reboot. Arch is so pared back that I could log in as root, not the safest of things to be doing, so I added an account for more regular use. After that, it has been a matter of tweaking the GNOME desktop environment and adding missing applications. The bare-bones installation that I allowed to happen meant that there were a surprising number of them, but that isn't difficult to fix using pacman.

All of this emphasises that Arch Linux is for those who want to pick what they want from an operating system rather than having that decided for you by someone else, an approach that has something going for it with some of the decisions that make their presence felt in computing environments from time to time. While there's no doubt that this isn't for everyone, the documentation is complete enough for the minimalism not to be a problem for experienced Linux users, and I certainly managed to make things work for me once I got them in the right order. Another thing in its favour is that Arch also is a rolling distribution, so you don't need to have to go through the whole set up routine every six months, unlike some others. So far, it does seem stable enough and even has set me to wondering if I could pop it on a real computer sometime.

Ridding Fedora of Unwanted Software Repositories

Like other Linux distributions, Fedora has the software repository scheme of things for software installation and updating. However, it could do with having the ability to remove unwanted repositories through a GUI, only it doesn't. What you need to do instead is switch to root in a terminal using the command su - and enter your root user password before navigating to /etc/yum.repos.d/ to delete the troublesome [file name].repo file. Recently, I needed to do this after upgrading to Fedora 14 or yum wouldn't work from the command line, which is the way that I tend to update Fedora (yum -y update is the command that I use because it automatically does all installations unattended until it is finished doing what's needed). The offending repository, or "Software Source" as these things are called in the GUI, belonged to Dropbox and even disabling it didn't make yum operate from the command like it should, so it had to go. Maybe Dropbox hasn't caught up with the latest release of Fedora, but that can be resolved another day.

Taking the sudo command beyond Ubuntu

Though some may call it introducing a security risk, being able to execute administrator commands on Ubuntu using sudo and gksu by default is handy. It's not the only Linux distribution with the facility, though, since the /etc/sudoers file is found in Debian and I plan to have a look into Fedora. The thing that needs to be done is to add the following line to the aforementioned file (you will need to do this as root):

[your user name] ALL=(ALL) ALL

One that is done, you are all set. Just make sure that you're using a secure password, though, and removing the sudo/gksu permissions is as simple as reversing the change.

Update on 2011-12-03: The very same can be done for both Arch Linux and Fedora, The same file locations apply too.

Relocating the Apache web server document root directory in Fedora 12

So as not to deface anything that is available online on the web, I have a tendency to set up an offline Apache server on a home PC to do any tinkering away from the eyes of the unsuspecting public. Though Ubuntu is my mainstay for home computing, I do have a PC with Fedora installed, and I have been trying to get an Apache instance to start automatically on there unsuccessfully for a few months. While I can start it by running the following command as root, I'd rather not have more manual steps than is necessary.

httpd -k start

The command used by the system when it starts is different and, even when manually run as root, it failed with messages saying that it couldn't find the directory while the web server files are stored. Here it is:

service httpd start

The default document root location on any Linux distribution that I have seen is /var/www and all is very well with this, but it isn't a safe place to leave things if ever a re-installation is needed. Having needed to wipe /var after having it on a separate disk or partition for the sake of one installation, it doesn't look so persistent to me. In contrast, you can safeguard /home by having it on another disk or in a dedicated partition, which means that it can be retained even when you change the distro that you're using. Thus, I have got into the habit of having the root of the web server document root folder in my home area, and that is where I have been seeing the problem.

Because of the access message, I tried using chmod and chgrp, but to no avail. The remedy has to do with reassigning the security contexts used by SELinux. In Fedora, Apache will not work with the context user_home_t that is usually associated with home directories, but needs httpd_sys_content_t instead. To find out what contexts are associated with particular folders, issue the following command:

ls -Z

The final solution was to create a user account whose home directory hosts the root of the web server file system, called www in my case. Then, I executed the following command as root to get things going:

chcon -R -h -t httpd_sys_content_t /home/www

It appears that even the root of the home directory has to have an appropriate security context (/home has home_root_t so that might do the needful too). Without that, nothing will work, even if all is well at the next level down. The switches for chcon command translate as follows:

-R : recursive; applies changes to all files and folders within a directory.

-h : changes apply only to symbolic links and not to where they refer in the file system.

-t : alters context type.

It took a while for all of this stuff about SELinux security contexts to percolate through to the point where I was able to solve the problem. A spot of further inspiration was needed too and even guided my search for the information that I needed. It's well worth trying Linux Home Networking if you need further details. Though there are references to an earlier release of Fedora, the content still applies to later versions of Fedora to the current release, if my experience is typical.

Command Line Software Management

One of the nice things about a Debian-based Linux distribution is that it is easy to pull a piece of software onto your system from a repository using either apt-get or aptitude. While some may prefer a GUI, but I find that the command line offers a certain extra transparency that stops the "what's it doing?" type of question. That's never to say that the GUI-based approach hasn't a place, and I only go using it when seeking out a piece of software without knowing its aptitude-ready name. Interestingly, there are signs that Canonical may be playing with the idea of making Ubuntu's Software Centre a full application management tool with updates and upgrades getting added to the current searching, installation and removal facilities. That well may be, but it's going to take a lot of effort to get me away from the command line altogether.

Fedora and openSUSE have their software management commands too in the shape of yum and zypper, respectively. The recent flurry of new operating system releases has had me experimenting with both of those distros on a real test machine. As might be expected, the usual battery of installation, removal and update activities are well served, and I have been playing with software searching using yum too.

One thing that has yet to mature is in-situ distribution upgrading, à la Ubuntu. In principle, it is possible, but I got a black screen when I tried moving from openSUSE 11.1 to 11.2 within VirtualBox using instructions on the openSUSE website. Not wanting to wait, I reached for a Live CD instead, and that worked a treat on both virtual and real machines.

Being in an experimental turn of mind, I attempted the same to get from Fedora 11 to the beta release of its version 12. A spot of repository trouble got me using a Live CD in its place. You can perform an in-situ upgrade from a full Fedora DVD, but the only option is system replacement when you have a Live CD.

Once installation is out of the way, YAST can be ignored in favour of zypper and yum is good enough that Fedora's GUI-using alternative can be ignored. It's nice to see good transparent ideas taking hold elsewhere and may make migration between distros much easier too.