Technology Tales

Adventures & experiences in contemporary technology

Getting rid of the Windows Resizing message from a Manjaro VirtualBox guest

27th July 2020

Like Fedora, Manjaro also installs a package for VirtualBox Guest Additions when you install the Linux distro in a VirtualBox virtual machine. However, it does have certain expectations when doing this. On many systems and my own is one of these, Linux guests are forced to use the VMSVGA virtual graphics controller while Windows guests are allowed to use the VBoxSVGA one. It is the latter that Manjaro expects so you get a message like the following appearing when the desktop environment has loaded:

Windows Resizing
Set your VirtualBox Graphics Controller to enable windows resizing

After ensuring that gcc, make, perl and kernel headers are installed, I usually install VirtualBox Guest Additions myself from the included ISO image and so I did the same with Manjaro. Doing that and restarting the virtual machine got me extra functionality like screen resizing and being able to copy and paste between the VM and elsewhere after choosing the Bidirectional setting in the menus under Devices > Shared Clipboard.

That still left an unwanted message popping up on startup. To get rid of that, I just needed to remove /etc/xdg/autostart/mhwd-vmsvga-alert.desktop. It can be deleted but I just moved it somewhere else and a restart proved that the message was gone as needed. Now everything is working as I wanted.

Contents not displaying for Shared Folders on a Fedora 32 guest instance in VirtualBox

26th July 2020

While some Linux distros like Fedora install VirtualBox drivers during installation time, I prefer to install the VirtualBox Guest Additions themselves. Before doing this, it is best to remove the virtualbox-guest-additions package from Fedora to avoid conflicts. After that, execute the following command to ensure that all prerequisites for the VirtualBox Guest Additions are in place prior to mounting the VirtualBox Guest Additions ISO image and installing from there:

sudo dnf -y install gcc automake make kernel-headers dkms bzip2 libxcrypt-compat kernel-devel perl

During the installation, you may encounter a message like the following:

ValueError: File context for /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf already defined

This is generated by SELinux so the following commands need executing before the VirtualBox Guest Additions installation is repeated:

sudo semanage fcontext -d /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf
sudo restorecon /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf

Without doing the above step and fixing the preceding error message, I had an issue with mounting of Shared Folders whereby the mount point was set up but no folder contents were displayed. This happened even when my user account was added to the vboxsf group and it proved to be the SELinux context issue that was the cause.

Removing obsolete libraries from Flatpak

1st February 2020

Along with various pieces of software, Flatpak also installs KDE and GNOME libraries needed to support them. However, it does not always remove obsolete versions of those libraries whenever software gets updated. One result is that messages regarding obsolete versions of GNOME may be issued and this has been known to cause confusion because there is the GNOME instance that is part of a Linux distro like Ubuntu and using Flatpak adds another one for its software packages to use. My use of Linux Mint may lesson the chances of misunderstanding.

Thankfully, executing a single command will remove any obsolete Flatpak libraries so the messages no longer appear and there then is no need to touch your actual Linux installation. This then is the command that sorted it for me:

flatpak uninstall --unused && sudo flatpak repair

The first part that removes any unused libraries is run as a normal user so there is no error in the above command. Administrative privileges are needed for the second section that does any repairs that are needed. It might be better if Flatpak did all this for you using the update command but that is not how the thing works. At least, there is a quick way to address this state of affairs and there might be some good reasons for having things work as they do.

A few more shell commands

8th July 2015

Here are some Linux commands that I encountered in a feature article in the current issue of Linux User & Developer that I had not met before:

cd --

This returns you to the previous directory where you were before with having to go back through the folder hierarchy to get there and is handy if you are jumping around a file system and any other means is far from speedy.

lsb_release -a

It can be useful to uncover what version of a distro you have from the command line and the above works for distros as diverse as Linux Mint, Debian, Fedora (it automatically installs in Fedora 22 if it is not installed already, a more advanced approach than showing you the command like in Linux Mint or Ubuntu), openSUSE and Manjaro. These days, the version may not change too often but it still is good to uncover what you have.

yum install fedora-upgrade

This one can be run either with sudo or in a root session started with su and it is specific to Fedora. The command performs an upgrade of the Fedora distro itself and I wonder if the functionality has been ported to the dnf command that has taken over from yum. My experiences with that in Fedora 22 so far suggest that it should be the case though I need to check that further with the VirtualBox VM that I have created.

Installing FreeBSD in a VirtualBox Virtual Machine

2nd March 2014

With UNIX being the basis of Linux, I have a soft spot for trying out any UNIX that can be installed on a PC. For a while, I had OpenSolaris on the go and even vaguely recall having a look at one of the BSD’s. However, any recent attempt to install one of the latter, and there are quite a few around now, got stymied by some sort of kernel panic caused by using AMD CPU’s. With the return to the Intel fold arising from the upgrade of my main home PC last year, it perhaps was time to try again.

The recent release of FreeBSD 10.0 was the cue and I downloaded a DVD image for a test installation in a VirtualBox virtual machine with 4 GB of memory and a 32 GB virtual hard drive attached (expanding storage was chosen so not all the allocated space has been taken so far). The variant of FreeBSD chosen was the 64-bit x86 one and I set to installing it in there. Though not as pretty in appearance as those in various Linux distros, the installer was not that user unfriendly to me. Mind you, I have experience of installing Arch Linux so that might have acclimatised me somewhat.

Those installation screens ask about the keyboard mapping that you want and I successfully chose one of the UK options. There was limited opportunity for adding extras though there was a short list of few from which I made some selections. User account set up also was on offer and I would have been better off knowing what groups to assign for my personal user account so as to have to avoid needing to log in as root so often following system start up later. Otherwise, all the default options were sufficient.

When the installation process was complete, it was time to boot into the new system and all that was on offer was a command line log in session. After logging in as root, it was time to press pkg into service in order to get a desktop environment in place. The first step was to install X:

pkg install xorg

Then, it was time to install a desktop environment. While using XFCE or KDE were alternatives, I chose GNOME 2 due to familiarity and more extensive instructions on the corresponding FreeBSD handbook page. Issuing the following command added GNOME and all its helper applications:

pkg install gnome2

So that GNOME starts up at the next reboot, some extra steps are needed. The first of these is to add the following line into /etc/fstab:

proc /proc procfs rw 0 0

Then, two lines were needed in /etc/rc.conf:

gdm_enable=”YES”
gnome_enable=”YES”

The first enables the GNOME display manager and the second activates other GNOME programs that are needed for a desktop session to start. With each of these in place, I got a graphical login screen at the next boot time.

With FreeDSB being a VirtualBox Guest, it was time to consult the relevant FreeBSD manual page. Here, there are sections for a number of virtual machine tools so a search was needed to find the one for VirtualBox. VirtualBox support for FreeBSD is incomplete in that there is no installation media for BSD systems though Linux and Solaris are supported along with Windows. Therefore, it is over to the FreeBSD repositories for the required software:

pkg install virtualbox-ose-additions

Aside from the virtual machine session not capturing and releasing the mouse pointer automatically, that did everything that was needed even if it was the open source edition of the drivers and their proprietary equivalents. To resolve the mouse pointer issue, I needed to temporarily disable the GNOME desktop session in /etc/rc.conf to drop down to a console only session where xorg. conf could be generated using the following commands:

Xorg -configure
cp xorg.conf.new /etc/xorg.conf

In the new xorg.conf file, the mouse section needs to be as follows:

Section “InputDevice”
Identifier  “Mouse0”
Driver      “vboxmouse”
EndSection

If it doesn’t look like the above and it wasn’t the case for me then it needs changing. Also, any extra lines from the default set up also need removing or the mouse will not function as it should. The ALT+F1 (for accessing GNOME menus) and ALT+F2 (for running commands) keyboard shortcuts then become crucial when your mouse is not working as it should and could avert a panic too; knowing that adjusting a single configuration file will fix a problem when doing so is less accessible is not a good feeling as I discovered to my own cost. The graphics settings were fine by default but here’s what you should have in case it isn’t for you:

Section “Device”
### Available Driver options are:-
### Values: <i>: integer, <f>: float, <bool>: “True”/”False”,
### <string>: “String”, <freq>: “<f> Hz/kHz/MHz”
### [arg]: arg optional
Identifier  “Card0”
Driver      “vboxvideo”
VendorName  “InnoTek Systemberatung GmbH”
BoardName   “VirtualBox Graphics Adapter”
BusID       “PCI:0:2:0”
EndSection

The next step is to ensure that your HAL settings are as they should. I needed to create a file in /usr/local/etc/hal/fdi/policy called 90-vboxguest.fdi that contains the following:

<?xml version=”1.0″ encoding=”utf-8″?>
<!--
# Sun VirtualBox
# Hal driver description for the vboxmouse driver
# $Id: chapter.xml,v 1.33 2012-03-17 04:53:52 eadler Exp $
Copyright (C) 2008-2009 Sun Microsystems, Inc.
This file is part of VirtualBox Open Source Edition (OSE, as
available from http://www.virtualbox.org. This file is free software;
you can redistribute it and/or modify it under the terms of the GNU
General Public License (GPL) as published by the Free Software
Foundation, in version 2 as it comes in the “COPYING” file of the
VirtualBox OSE distribution. VirtualBox OSE is distributed in the
hope that it will be useful, but WITHOUT ANY WARRANTY of any kind.
Please contact Sun Microsystems, Inc., 4150 Network Circle, Santa
Clara, CA 95054 USA or visit http://www.sun.com if you need
additional information or have any questions.
-->
<deviceinfo version=”0.2″>
<device>
<match key=”info.subsystem” string=”pci”>
<match key=”info.product” string=”VirtualBox guest Service”>
<append key=”info.capabilities” type=”strlist”>input</append>
<append key=”info.capabilities” type=”strlist”>input.mouse</append>
<merge key=”input.x11_driver” type=”string”>vboxmouse</merge>
<merge key=”input.device” type=”string”>/dev/vboxguest</merge>
</match>
</match>
</device>
</deviceinfo>

With all that set, it is time to ensure that the custom user account is added to the wheel and operator groups using this command:

pw user mod [user name] -G wheel operator

Executing the above as root means that the custom account can run the su command so that logging in as root at the start of a desktop session no longer is needed. That is what being in the wheel group allows and the anyone in the operator group can shut down or restart the system. Both are facilities readily available in Linux so I fancied having them in FreeBSD too.

Being able to switch to root in a terminal session meant that I could go on to add software like Firefox, Libreoffice, GIMP, EMACS, Geany, Netbeans, Banshee and so on. There may be a line of opinion that FreeBSD is a server operating system but all of these make it more than passable for serving as a desktop one too. There may be no package management GUI as such and the ones that come with GNOME do not work either but anyone familiar with command line working will get around that.

FreeBSD may be conservative but that has its place too and being able to build up a system one item at a time teaches far more than getting everything already sorted in one hit. So far, there is enough documentation to get me going and I hope to see where else things go too. So far, the OS hasn’t been that intimidating and that’s good to see.

Installing Citrix Receiver 13.0 in Ubuntu GNOME 13.10 64-bit

28th November 2013

Installing the latest version of Citrix Receiver (13.0 at the time of writing) on 64-bit Ubuntu should be as simple as downloading the required DEB package and double-clicking on the file so that Ubuntu Software Centre can work its magic. Unfortunately, the 64-bit DEB file is faulty so that means that the Ubuntu community how-to guide for Citrix still is needed. In fact, any user of Linux Mint or another distro that uses Ubuntu as its base would do well to have a look at that Ubuntu link.

For sake of completeness, I still am going to let you in on the process that worked for me. Once the DEB file has been downloaded, the first task is to creating a temporary folder where the DEB file’s contents can be extracted:

mkdir ica_temp

With that in place, it then is time to do the extraction and it needs two commands with the second of these need to extract the control file while the first extracts everything else.

sudo dpkg-deb -x icaclient- ica_temp
sudo dpkg-deb --control icaclient- ica_temp/DEBIAN

It is the control file that has been the cause of all the bother because it refers to unavailable dependencies that it really doesn’t need anyway. To open the file for editing, issue the following command:

sudo gedit ica_temp/DEBIAN/control

Then change line 7 (it should begin with Depends:) to: Depends: libc6-i386 (>= 2.7-1), lib32z1, nspluginwrapper. There are other software packages in there that Ubuntu no longer supports and they are not needed anyway. With the edit made and the file saved, the next step is to build a new DEB package with the corrected control file:

dpkg -b ica_temp icaclient-modified.deb

Once you have the package, the next step is to install it using the following command:

sudo dpkg -i icaclient-modified.deb

If it fails, then you have missing dependencies and the following command should sort these before a re-run of the above command again:

sudo apt-get install libmotif4:i386 nspluginwrapper lib32z1 libc6-i386

With Citrix Receiver installed, there is one more thing that is needed before you can use it freely. This is to put Thawte security certificate files into /opt/Citrix/ICAClient/keystore/cacerts. What I had not realised until recently was that many of these already are in /usr/share/ca-certificates/mozilla and linking to them with the following command makes them available to Citrix receiver:

sudo ln -s /usr/share/ca-certificates/mozilla/* /opt/Citrix/ICAClient/keystore/cacerts/

Another approach is to download the Thawte certificates and extract the archive to /tmp/. From there they can be copied to /opt/Citrix/ICAClient/keystore/cacerts and I copied the Thawte Personal Premium certificate as follows:

sudo cp /tmp/Thawte Root Certificates/Thawte Personal Premium CA/Thawte Personal Premium CA.cer /opt/Citrix/ICAClient/keystore/cacerts/

Until I found out about what was in the Mozilla folder, I simply picked out the certificate mentioned in the Citrix error message and copied it over like the above. Of course, all of this may seem like a lot of work to those who are non-tinkerers and I have added a repaired 64-bit DEB package that incorporates all of the above and should not need any further intervention aside from installing it using GDebi, Ubuntu’s Software Centre, dpkg or anything else that does what’s needed.

A look at Ubuntu GNOME 13.10

12th October 2013

With its final release being near at hand, I decided to have a look at the beta release of Ubuntu GNOME 13.10 to get a sense of what might be coming. A misstep along the way had me inadvertently download and install the 64-bit edition of 13.04 into a VirtualBox virtual machine. The intention to update that to its soon to be released successor was scuppered by instability so I never did get to try out an in situ upgrade to 13.10. What I had in mind was to issue the following command:

gksu update-manager -d

However, I found another one when considering how Ubuntu Server might be upgraded without the GUI application that is the Update Manager. To update to a development version, the following command is what you need:

sudo do-release-upgrade -d

To upgrade to a final release of of a new version of Ubuntu, drop the -d switch from the above to use the following:

sudo do-release-upgrade

There is one further option that isn’t recommended for moving between Ubuntu versions but I use it to get updates such as new kernel subversions that are released:

sudo apt-get dist-upgrade

Rather than trying out the above, I downloaded the latest ISO image for the beta release of Ubuntu GNOME 13.10 and installed onto a VM that instead. Though it is the 32 bit version of the distro that is installed on my main home PC, it has been the 64 bit version that I have been trying. So far, that seems to be behaving itself even if it feels a little sluggish but that could be down to the four year old PC that hosts the virtual machine. For a while, I have been playing with the possibility of an upgrade involving an Intel Core i5 4670K CPU and 16 GB of RAM (useful for running multiple virtual machines at a time) along with any motherboard that supports those so looking at a 64 bit operating system has its uses.

The Linux kernel may be 3.11 but that is not my biggest concern. Neither is the fact that LibreOffice 4.1.2.3 was included and GIMP wasn’t, especially when that could be added easily anyway and it is version 2.8.6 that you get. The move to GNOME Shell 3.8 was what drew me to seeing what was coming because I have been depending on a number extensions. As with WordPress and plugins, GNOME Shell seems to have a tempestuous relationship with some of its extensions and I wanted to see which ones still worked. There also has been a change to the backstage application view in that you either get all installed applications displayed when you browse them or you have to start typing the name of the one you want to select it. Losing the categorical view that has been there until GNOME Shell 3.6 is a step backwards and I hope that version 3.10 has seen some sort of a reinstatement. There is a way to add these categories and the result is not as it once was either; also, it shouldn’t be necessary for anyone to dive into a systems innards to address things like this. With all the constant change, it is little wonder that Cinnamon has become a standalone entity with the release of its version 2.0 and that Debian’s toyed with not going with GNOME for its latest version (7.1 at the time of writing and it picked a good GNOME Shell version in 3.4).

Having had a look at other distribution that already have GNOME Shell 3.8, I knew that a few of my extensions worked with it. The list includes Frippery Bottom Panel, Frippery Move Clock, Places Status Indicator, Removable Drive Menu, Remove Rounded Corners (not really needed with the GNOME Shell theme that I use, Elementary Luna 3.4, but I retain it anyway), Show Desktop Button, User Themes and Ignore_Request_Hide_Titlebar. Because of the changes to the backstage view, I added Frippery Applications Menu in preference to Applications Menu because I have found that to be unstable. Useful new discoveries have included Curtains Up and GNOME Shell Open Terminal while Shell Restart User Menu Entry has made a return and found a use this time around too.

There have been some extensions that were not updated to work with GNOME Shell 3.8 that I have got working. In some cases, it was as simple as updating the metadata.json file for an extension with new version numbers of 3.8 and 3.84 to the list associated with the shell version property. All extensions are to be found in the .local/share/gnome-shell/extensions location in your home directory and each has a dedicated file containing the aforementioned file.

With others, it was a matter of looking in the Looking Glass (execute lg in the box that ALT + F2 brings up on your screen to access this) and seeing what error messages were to be found in there before attempting to correct these in either the extensions’ extension.js files or whatever JavaScript (*.js) file was causing the problem. With either or both of these remedies, I managed to port the four extensions below to GNOME Shell 3.8. In fact, you can download these zip files and install them yourself to see how you get on with them.

Advanced Settings in User Menu

Antisocial Menu

Remove App Menu

Restart Shell Entry

There is a Remove Panel App Menu that works with GNOME Shell 3.8 but I found that it got rid of the Places menu instead of the panel’s App Menu so I tried porting the older extension to see if it behaved itself and it does. With these in place, I have bent Ubuntu GNOME 13.10 to my will ahead of its final release next week and that includes customising Nautilus too. Other than a new version of GNOME Shell, it looks as if it will come with less in the way of drama and a breather like that is no bad thing given that personal computing continues to remain in a state of flux these days.

A need to update graphics hardware

16th June 2013

Not being a gaming enthusiast, having to upgrade graphics cards in PC’s is not something that I do very often or even rate as a priority. However, two PC’s in my possession have had that very piece of hardware upgraded on them and it’s not because anything was broken either. My backup machine has seen quite a few Linux distros on there since I built it nearly four years ago. The motherboard is an ASRock K10N78 that sourced from MicroDirect and it has onboard an NVIDIA graphics chip that has performed well if not spectacularly. One glitch that always existed was a less than optimal text rendering in web browsers but that never was enough to get me to add a graphics card to the machine.

More recently, I ran into trouble with Sabayon 13.04 with only the 2D variant of the Cinnamon desktop environment working on it and things getting totally non-functional when a full re-installation of the GNOME edition was attempted. Everything went fine until I added the latest updates to the system when a reboot revealed that it was impossible to boot into a desktop environment. Some will relish this as a challenge but I need to admit that I am not one of those. In fact, I tried out two Arch-based distros on the same PC and got the same results following a system update on each. So, my explorations of Antergos and Manjaro have to continue in virtual machines instead.

To get a working system, I gave Linux Mint 15 Cinnamon a go and that worked a treat. However, I couldn’t ignore that the cutting edge distros that I tried before it all took exception to the onboard NVIDIA graphics. systemd has been implemented in all of these and it seems reasonable to think that it is coming to Linux Mint at some stage in the future so I went about getting a graphics card to add into the machine. Having had good experiences with ATi’s Radeon in the past, I stuck with it even though it now is in the hands of AMD. Not being that fussed so long there was Linux driver support, I picked up a Radeon HD 6450 card from PC World. Adding it into the PC was a simpler of switching off the machine, slotting in the card, closing it up and powering it on again. Only later on did I set the BIOS to look for PCI Express graphics before anything else and I could have got away without doing that. Then, I made use of the Linux Mint Additional Driver applet in its setting panel to add in the proprietary driver before restarting the machine to see if there were any visual benefits. To sort out the web browser font rendering, I used the Fonts applet in the same settings panel and selected full RGBA hinting. The improvement was unmissable if not still like the appearance of fonts on my main machine. Overall, there had been an improvement and a spot of future proofing too.

That tinkering with the standby machine got me wondering about what I had on my main PC. As well as onboard Radeon graphics, it also gained a Radeon 4650 card for which 3D support wasn’t being made available by Ubuntu GNOME 12.10 or 13.04 to VMware Player and it wasn’t happy about this when a virtual machine was set to have 3D support. Adding the latest fglrx driver only ensured that I got a command line instead of a graphical interface. Issuing one of the following commands and rebooting was the only remedy:

sudo apt-get remove fglrx

sudo apt-get remove fglrx-updates

Looking at the AMD website revealed that they no longer support 2000, 3000 or 4000 series Radeon cards with their latest Catalyst driver the last version that did not install on my machine since it was built for version 3.4.x of the Linux kernel. A new graphics card then was in order if I wanted 3D graphics in VWware VM’s and both GNOME and Cinnamon appear to need this capability. Another ASUS card, a Radeon HD 6670, duly was acquired and installed in a manner similar to the Radeon HD 6450 on the standby PC. Apart from not needing to alter the font rendering (there is a Font tab on Gnome Tweak Tool where this can be set), the only real exception was to add the Jockey software to my main PC for installation of the proprietary Radeon driver. The following command does this:

sudo apt-get install jockey-kde

When that was done I issue the jockey-kde command and selected the first entry on the list. The machine worked as it should on restarting apart from an AMD message at the bottom right hand corner bemoaning unrecognised hardware. There had been two entries on that Jockey list with exactly the same name so it was time to select the second of these and see how it went. On restarting, the incompatibility message had gone and all was well. VMware even started virtual machines with 3D support without any messages so the upgrade did the needful there.

Hearing of someone doing two PC graphics card upgrades in a weekend may make you see them as an enthusiast but my disinterest in computer gaming belies this. Maybe it highlights that Linux operating systems need 3D more than might be expected. The Cinnamon desktop environment now issues messages if it is operating in 2D mode with software 3D rendering and GNOME always had the tendency to fall back to classic mode, as it had been doing when Sabayon was installed on my standby PC. However, there remain cases where Linux can rejuvenate older hardware and I installed Lubuntu onto a machine with 10 year old technology on there (an 1100 MHz Athlon CPU, 1GB of RAM and 60GB of hard drive space in case dating from 1998) and it works surprisingly well too.

It seems that having fancier desktop environments like GNOME Shell and Cinnamon means having the hardware on which it could run. For a while, I have been tempted by the possibility of a new PC since even my main machine is not far from four years old either. However, I also spied a CPU, motherboard and RAM bundle featuring an Intel Core i5-4670 CPU, 8GB of Corsair Vengence Pro Blue memory and a Gigabyte Z87-HD3 ATX motherboard included as part of a pre-built bundle (with a heatsink and fan for the CPU) for around £420. Even for someone who has used AMD CPU’s since 1998, that does look tempting but I’ll hold off before making any such upgrade decisions. Apart from exercising sensible spending restraint, waiting for Linux UEFI support to mature a little more may be no bad idea either.

Update 2013-06-23: The new graphics card in my main machine is working as it should and has reduced the number of system error report messages turning up too; maybe Ubuntu GNOME 13.04 didn’t fancy the old graphics card all that much. A rogue .fonts.conf file was found in my home area on the standby machine and removing it has improved how fonts are displayed on there immeasurably. If you find one on your system, it’s worth doing the same or renaming it to see if it helps. Otherwise, tinkering with the font rendering settings is another beneficial act and it even helps on Debian 6 too and that uses GNOME 2! Seeing what happens on Debian 7.1 could be something that I go testing sometime.

An in situ upgrade to Linux Mint 12

4th December 2011

Though it isn’t the recommended approach, I have ended up upgrading to Linux Mint 12 from Linux Mint 11 using an in situ route. Having attempted this before with a VirtualBox hosted installation, I am well aware of the possibility of things going wrong. Then, a full re-installation was needed to remedy the situation. With that in mind, I made a number of backups in the case of an emergency fresh installation of the latest release of Linux Mint. Apache and VirtualBox configuration files together with MySQL backups were put where they could be retrieved should that be required. The same applied to the list of installed packages on my system. So far, I haven’t needed to use these, but there is no point in taking too many chances.

The first step in an in-situ Linux Mint upgrade is to edit /etc/apt/sources.list. In the repository location definitions, any reference to katya (11) was changed to lisa (for 12) and the same applied to any appearance of natty (Ubuntu 11.04) which needed to become oneiric (Ubuntu 11.10). With that done, it was time to issue the following command (all one line even if it is broken here):

sudo apt-get update && sudo apt-get upgrade && sudo apt-get dist-upgrade

Once that had completed, it was time to add the new additions that come with Linux Mint 12 to my system using a combination of apt-get, aptitude and Synaptic; the process took a few cycles. GNOME already was in place from prior experimentation, so there was no need to add this anew. However, I need to instate MGSE to gain the default Linux Mint customisations of GNOME 3. Along with that, I decided to add MATE, the fork of GNOME 2. That necessitated the removal of two old libraries (libgcr0 and libgpp11, if I recall correctly but it will tell you what is causing any conflict) using Synaptic. With MGSE and MATE in place, it was time to install LightDM and its Unity greeter to get the Linux Mint login screen. Using GDM wasn’t giving a very smooth visual experience and Ubuntu, the basis of Linux Mint, uses LightDM anyway. Even using the GTK greeter with LightDM produced a clunky login box in front of a garish screen. Configuration tweaks could have improved on this but it seems that using LightDM and Unity greeter is what gives the intended setup and experience.

With all of this complete, the system seemed to be running fine until the occasional desktop freeze occurred with Banshee running. Blaming that, I changed to Rhythmbox instead, though that helped only marginally. While this might be blamed on how I upgraded my system, things seemed to have steadied themselves in the week since then. As a test, I had the music player going for a few hours and there was no problem. With the call for testing of an update to MATE a few days ago, it now looks as if there may have been bugs in the original release of Linux Mint 12. Daily updates have added new versions of MGSE and MATE so that may have something to do with the increase in stability. Even so, I haven’t discounted the possibility of needing to do a fresh installation of Linux Mint 12 just yet. However, if things continue as they are, then it won’t be needed and that’s an upheaval avoided should things go that way. That’s why in situ upgrades are attractive though rolling distros like Arch Linux (these words are being written on a system running this) and LMDE are more so.

Sorting out MySQL on Arch Linux

5th November 2011

Seeing Arch Linux running so solidly in a VirtualBox virtual box has me contemplating whether I should have it installed on a real PC. Saying that, recent announcements regarding the implementation of GNOME 3 in Linux Mint have caught my interest even if the idea of using a rolling distribution as my main home operating system still has a lot of appeal for me. Having an upheaval come my way every six months when a new version of Linux Mint is released is the main cause of that.

While remaining undecided, I continue to evaluate the idea of Arch Linux acting as my main OS for day-to-day home computing. Towards that end, I have set up a working web server instance on there using the usual combination of Apache, Perl, PHP and MySQL. Of these, it was MySQL that went the least smoothly of all because the daemon wouldn’t start for me.

It was then that I started to turn to Google for inspiration and a range of actions resulted that combined to give the result that I wanted. One problem was a lack of disk space caused by months of software upgrades. Since tools like it in other Linux distros allow you to clear some disk space of obsolete installation files, I decided to see if it was possible to do the same with pacman, the Arch Linux command line package manager. The following command, executed as root, cleared about 2 GB of cruft for me:

pacman -Sc

The S in the switch tells pacman to perform package database synchronization while the c instructs it to clear its cache of obsolete packages. In fact, using the following command as root every time an update is performed both updates software and removes redundant or outmoded packages:

pacman -Syuc

So I don’t forget the needful housekeeping, this will be what I use in future with the y being the switch for a refresh and the u triggering a system upgrade. It’s nice to have everything happen together without too much effort.

To do the required debugging that led me to the above along with other things, I issued the following command:

mysqld_safe --datadir=/var/lib/mysql/ &

This starts up the MySQL daemon in safe mode if all is working properly and it wasn’t in my case. Nevertheless, it creates a useful log file called myhost.err in /var/lib/mysql/. This gave me the messages that allowed the debugging of what was happening. It led me to installing net-tools and inettools using pacman; it was the latter of these that put hostname on my system and got the MySQL server startup a little further along. Other actions included unlocking the ibdata1 data file and removing the ib_logfile0 and ib_logfile1 files so as to gain something of a clean sheet. The kill command was used to shut down any lingering mysqld sessions too. To ensure that the ibdata1 file was unlocked, I executed the following commands:

mv ibdata1 ibdata1.bad
cp -a ibdata1.bad ibdata1

These renamed the original and then crated a new duplicate of it with the -a switch on the cp command forcing copying with greater integrity than normal. Along with the various file operations, I also created a link to my.cnf, the MySQL configuration file on Linux systems, in /etc using the following command executed by root:

ln -s /etc/mysql/ my.cnf /etc/my.cnf

While I am unsure if this made a real difference, uncommenting the lines in the same file that pertained to InnoDB tables. What directed me to these were complaints from mysqld_safe in the myhost.err log file. All I did was to uncomment the lines beginning with “innodb” and these were 116-118, 121-122 and 124-127 in my configuration file but it may be different in yours.

After all the above, the MySQL daemon ran happily and, more importantly, started when I rebooted the virtual machine. Thinking about it now, I believe that was a lack of disk space, the locking of a data file and the lack of InnoDB support that was stopping the MySQL service from running.Running commands like mysqld start weren’t yielding useful messages so a lot of digging was needed to get the result that I needed. In fact, that’s one of the reasons why I am sharing my experiences here.

In the end, creating databases and loading them with data was all that was needed for me to start see functioning websites on my (virtual) Arch Linux system. It turned out to be another step on the way to making it workable as a potential replacement for the Linux distributions that I use most often (Linux Mint, Fedora and Ubuntu).

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