Tag Archive for Linux Distribution

Sorting out MySQL on Arch Linux

November 5, 2011 No comments

Seeing Arch Linux running so solidly in a VirtualBox virtual box has me contemplating whether I should have it installed on a real PC. Saying that, recent announcements regarding the implementation of GNOME 3 in Linux Mint have caught my interest even if the idea of using a rolling distribution as my main home operating system still has a lot of appeal for me. Having an upheaval come my way every six months when a new version of Linux Mint is released is the main cause of that.

While remaining undecided, I continue to evaluate the idea of Arch Linux acting as my main OS for day-to-day home computing. Towards that end, I have set up a working web server instance on there using the usual combination of Apache, Perl, PHP and MySQL. Of these, it was MySQL that went the least smoothly of all because the daemon wouldn’t start for me.

It was then that I started to turn to Google for inspiration and a range of actions resulted that combined to give the result that I wanted. One problem was a lack of disk space caused by months of software upgrades. Since tools like it in other Linux distros allow you to clear some disk space of obsolete installation files, I decided to see if it was possible to do the same with pacman, the Arch Linux command line package manager. The following command, executed as root, cleared about 2 GB of cruft for me:

pacman -Sc

The S in the switch tells pacman to perform package database synchronization while the c instructs it to clear its cache of obsolete packages. In fact, using the following command as root every time an update is performed both updates software and removes redundant or outmoded packages:

pacman -Syuc

So I don’t forget the needful housekeeping, this will be what I use in future with the y being the switch for a refresh and the u triggering a system upgrade. It’s nice to have everything happen together without too much effort.

To do the required debugging that led me to the above along with other things, I issued the following command:

mysqld_safe –datadir=/var/lib/mysql/ &

This starts up the MySQL daemon in safe mode if all is working properly and it wasn’t in my case. Nevertheless, it creates a useful log file called myhost.err in /var/lib/mysql/. This gave me the messages that allowed the debugging of what was happening. It led me to installing net-tools and inettools using pacman; it was the latter of these that put hostname on my system and got the MySQL server startup a little further along. Other actions included unlocking the ibdata1 data file and removing the ib_logfile0 and ib_logfile1 files so as to gain something of a clean sheet. The kill command was used to shut down any lingering mysqld sessions too. To ensure that the ibdata1 file was unlocked, I executed the following commands:

mv ibdata1 ibdata1.bad
cp -a ibdata1.bad ibdata1

These renamed the original and then crated a new duplicate of it with the -a switch on the cp command forcing copying with greater integrity than normal. Along with the various file operations, I also created a link to my.cnf, the MySQL configuration file on Linux systems, in /etc using the following command executed by root:

ln -s /etc/mysql/ my.cnf /etc/my.cnf

While I am unsure if this made a real difference, uncommenting the lines in the same file that pertained to InnoDB tables. What directed me to these were complaints from mysqld_safe in the myhost.err log file. All I did was to uncomment the lines beginning with “innodb” and these were 116-118, 121-122 and 124-127 in my configuration file but it may be different in yours.

After all the above, the MySQL daemon ran happily and, more importantly, started when I rebooted the virtual machine. Thinking about it now, I believe that was a lack of disk space, the locking of a data file and the lack of InnoDB support that was stopping the MySQL service from running.Running commands like mysqld start weren’t yielding useful messages so a lot of digging was needed to get the result that I needed. In fact, that’s one of the reasons why I am sharing my experiences here.

In the end, creating databases and loading them with data was all that was needed for me to start see functioning websites on my (virtual) Arch Linux system. It turned out to be another step on the way to making it workable as a potential replacement for the Linux distributions that I use most often (Linux Mint, Fedora and Ubuntu).

Databases, Linux, Software, Virtualisation, Web Technologies, Web Tools

, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,

All Change?

September 19, 2011 One comment

Could 2011 be remembered as the year when the desktop computing interface got a major overhaul? One part of this, Windows 8, won’t be with us until next year but there has been enough happening so far this year that has resulted in a lot of comment. With many if not all of the changes, it is possible to detect the influence of interfaces used on smartphones. After all, the carryover from Windows Phone 7 to the new Metro interface is unmistakeable.

Two developments in the Linux world have spawned a hell of an amount of comment: Canonical’s decision to develop Unity for Ubuntu and the arrival of GNOME 3. While there have been many complaints about the changes made in both, there must be a fair few folk who are just getting on with using them without complaint. Maybe there are many who even quietly like the new interfaces. While I am not so sure about Unity, I surprised myself by taking to GNOME Shell so much that I installed it on Linux Mint. It remains a work in progress as does Unity but it’ll be very interesting to see it mature. Perhaps a good number of the growing collection of GNOME Shell plugins could make it into the main codebase. If that were to happen, I could see it being welcomed by a good few folk.

There was little doubt that the changes in GNOME 3 looked daunting so Ubuntu’s taking a different approach is understandable until you come to realise how change that involves anyway. With GNOME 3 working so well for me, I feel disinclined to dally very much with Unity at all. In fact, I am writing these words on a Toshiba laptop running UGR, effectively Ubuntu running GNOME 3, and that could become my main home computing operating system in time.

For those who find these changes not to their taste, there are alternatives. Some Linux distributions are sticking with GNOME 2 as long as they can and there apparently has been some mention of a fork to keep a GNOME 2 interface available indefinitely. However, there are other possibilities such as LXDE and XFCE out there too. In fact, until GNOME 3 won me over, LXDE was coming to mind as a place of safety until I learned that Linux Mint was retaining its desktop identity. As always, there’s KDE too but I have never warmed to that for some reason.

The latest version of OS X, Lion, also included some changes inspired by iOS, the operating system that powers both the iPhone and iPad. However, while the current edition of PC Pro highlights some disgruntlement in professional circles regarding Apple’s direction, they do not seem to have aroused the kind of ire that has been abroad in the world of Linux. Is it because Linux users want to feel that they are in charge and that iMac and MacBook users are content to have decisions made for them so long as everything just works? Speaking for myself, the former description seems to fit me though having choices means that I can reject decisions that I do not like so much.

At the time of writing, the release of a developer preview of the next version of Windows has been generating a lot of attention. It also appears that changes are headed for the Windows user too. However, I get the sense that a more conservative interface option will be retained and that could be essential for avoiding the alienation of corporate users. After all, I cannot see the Metro interface gaining much favour in the working environment when so many of us have so much to do. Nevertheless, I plan to get my hands on the developer preview to have a look (the weekend proved too short for this). It will be very interesting to see how the next version of Windows develops and I plan to keep an eye on it as it does so.

It now looks as if many will have their work cut out if they are to avoid where desktop computing interfaces are going. Established paradigms are being questioned, particularly as a result of touch interfaces on smartphones and tablets. Wii and Kinect have involved other ways of interacting with computers too so there’s a lot of mileage in rethinking how we work with computers. So far, I have been able to deal with the changes in the world of Linux but I am left wondering at the changes that Microsoft is making. After Vista, they need to be careful and they know that. Maybe, they’ll be better at getting users through changes in computing interfaces than others but it’ll be very interesting to see what happens. Unlike open source community projects, they have the survival of a massive multinational at stake.

Hardware, Linux, Mac, Software, Windows

, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,

On Upgrading to Linux Mint 11

May 31, 2011 One comment

For a Linux distribution that focuses on user friendliness, it does surprise me that Linux Mint offers no seamless upgrade path. In fact, the underlying philosophy is that upgrading an operating system is a risky business. However, I have been doing in-situ upgrades for both Ubuntu and Fedora for a few years without any real calamities. A mishap with a hard drive that resulted in lost data in the days when I mainly was a Windows user places this into sharp relief. These days, I am far more careful but thought nothing of sticking a Fedora DVD into a drive to move my Fedora machine from 14 to 15 recently. Apart from a few rough edges and the need to get used to GNOME 3 together with making a better fit for me, there was no problem to report. The same sort of outcome used to apply to those online Ubuntu upgrades that I was accustomed to doing.

The recommended approach for Linux Mint is to backup your package lists and your data before the upgrade. Doing the former is a boon because it automates adding the extras that a standard CD or DVD installation doesn’t do. While I did do a little backing up of data, it wasn’t total because I know how to identify my drives and take my time over things. Apache settings and the contents of MySQL databases were my main concern because of where these are stored.

When I was ready to do so, I popped a DVD in the drive and carried out a fresh installation into the partition where my operating system files are kept. Being a Live DVD, I was able to set up any drive and partition mappings with reference to Mint’s Disk Utility. What didn’t go so well was the GRUB installation and it was due to the choice that I made in one of the installation screens. Despite doing an installation of version 10 just over a month ago, I had overlooked an intricacy of the task and placed GRUB on the operating system files partition rather than at the top level for the disk where it is located. Instead of trying to address this manually, I took the easier and more time-consuming step of repeating the installation like I did the last time. If there was a graphical tool for addressing GRUB problems, I might have gone for that instead but am left wondering at why there isn’t one included at all. Maybe it’s something that the people behind GRUB should consider creating unless there is one out there already about which I know nothing.

With the booting problem sorted, I tried logging in only to find a problem with my desktop that made the system next to unusable. It was back to the DVD and I moved many of the configuration files and folders (the ones with names beginning with a “.”) from my home directory in the belief that there might have been an incompatibility. That action gained me a fully usable desktop environment but I now think that the cause of my problem may have been different to what I initially suspected. Later I discovered that ownership of files in my home area elsewhere wasn’t associated with my user ID though there was no change to it during the installation. As it happened, few minutes with the chown command were enough to sort out the permissions issue.

The restoration of the extra software that I had added beyond what standardly gets installed was took its share of time but the use of a previously prepared list made things so much easier. That it didn’t work smoothly because some packages couldn’t be found the first time around so another one was needed. Nevertheless, that is nothing compared to the effort needed to do the same thing by issuing an installation command at a time. Once the usual distribution software updates were in place, all that was left was to update VirtualBox to the latest version, install a Citrix client and add a PHP plugin to NetBeans. Then, next to everything was in place for me.

Next, Apache settings were restored as were the databases that I used for offline web development. That nearly was all that was needed to get offline websites working but for the need to add an alias for localhost.localdomain. That required installation of the Network Settings tool so that I could add the alias in its Hosts tab. With that out of the way, the system had been settled in and was ready for real work.

In light of some of the glitches that I saw, I can understand the level of caution regarding a more automated upgrade process on the part of the Linux Mint team. Even so, I still am wondering if the more manual alternative that they have pursued brings its own problems in the form of those that I met. The fact that the whole process took a few hours in comparison to the hour taken by the in-situ upgrades that I mentioned earlier is another consideration that makes you wonder if it is all worth it every six months or so. Saying that, there is something to letting a user decide when to upgrade rather than luring one along to a new version, a point that is more than pertinent in light of the recent changes made to Ubuntu and Fedora. Whichever approach you care to choose, there are arguments in favour as well as counterarguments too.

Linux, Software

, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,

Improving Font Display in Fedora 15

May 30, 2011 One comment

When I first started to poke around Fedora 15 after upgrading my Fedora machine, the definition of the font display was far from being acceptable to me. Thankfully, it was something that I could resolve and I am writing these words with the letters forming them being shown in a way that was acceptable to me. The main thing that I did to achieve this was to add a file named 99-autohinter-only.conf in the folder /etc/fonts/conf.d. The file contains the following:

<?xml version=”1.0″?>
<!DOCTYPE fontconfig SYSTEM “fonts.dtd”>
<fontconfig>
<match target=”font”>
<edit name=”autohint” mode=”assign”>
<bool>true</bool>
</edit>
</match>
</fontconfig>

This forces autohinting for all fonts so that text looks better than it otherwise would. Apparently, Fedora 15 has seen the incorporation of the TrueType bytecode interpreter (BCI) into FreeType now that its patent has expired. To my eyes, this has worsened font rendering so I incorporated the above from a post by Kevin Kofler and it seems to have done the trick for me. However, I also have added the GNOME Tweak Tool and that allows you to alter the autohinting settings too so it may be a combination of the two actions that has helped. Anything that helps rendering of letters like k only can be a good thing. Another Linux distribution whose font rendering has not satisfied me is openSUSE and I am now set to wondering if the same approach would help there too, albeit without the GNOME Tweak Tool until a GNOME 3 version of that distro comes to fruition.

Linux, Software

, , , , , , , , , , , , , , , , , , , ,

Moving from Ubuntu 10.10 to Linux Mint 10

April 23, 2011 No comments

With a long Easter weekend available to me and with thoughts of forthcoming changes in the world of Ubuntu, I got to wondering about the merits of moving my main home PC to Linux Mint instead. Though there is a rolling variant based on Debian, I went for the more usual one based on Ubuntu that uses GNOME. For the record, Linux Mint isn’t just about the GNOME desktop but you also can have it with Xfce, LXDE and KDE desktops as well. While I have been known to use Lubuntu and like its LXDE implementation, I stuck with the option of which I have most experience.

Once I selected the right disk for the boot loader, the main installation of Mint went smoothly. By default, Ubuntu seems to take care of this but Mint leaves it to you. When you have your operating system files on sdc, installation on the default of sda isn’t going to produce a booting system. Instead, I ended up with GRUB errors and, while I suppose that I could have resolved these, the lazier option of repeating the install with the right boot loader location was the one that I chose. It produced the result that I wanted: a working and loading operating system.

However, there was not something not right about the way that the windows were displayed on the desktop with title bars and window management not working as they should. Creating a new account showed that it was the settings that were carried over from Ubuntu in my home area that were the cause. Again, I opted for a less strenuous option and moved things from the old account to the new one. One outcome of that decisions was that there was a lot of use of the chown command in order to get file and folder permissions set for the new account. In order to make this all happen, the new account needed to be made into an Administrator just like its predecessor; by default, more restrictive desktop accounts are created using the Users and Groups application from the Administration submenu. Once I was happy that the migration was complete, I backed up any remaining files from the old user folder and removed it from the system. Some of the old configuration files were to find a new life with Linux Mint.

In the middle of the above, I also got to customising my desktop to get the feel that is amenable. For example, I do like a panel at the top and another at the bottom. By default, Linux Mint only comes with the latter. The main menu was moved to the top because I have become used to having there and switchers for windows and desktops were added at the bottom. They were only a few from what has turned out not to be a short list of things that I fancied having: clock, bin, clearance of desktop, application launchers, clock, broken application killer, user switcher, off button for PC, run command and notification area. It all was gentle tinkering but still is the sort of thing that you wouldn’t want to have to do over and over again. Let’s hope that is the case for Linux Mint upgrades in the future. That the configuration files for all of these are stored in home area hopefully should make life easier, especially when an in-situ upgrade like that for Ubuntu isn’t recommended by the Mint team.

With the desktop arranged to my liking, the longer job of adding to the collection of software on there while pruning a few unwanted items too was next. Having had Apache, PHP and MySQL on the system before I popped in that Linux Format magazine cover disk for the installation, I wanted to restore them. To get the off-line websites back, I had made copies of the old Apache settings that simply were copied over the defaults in /etc/apache (in fact, I simply overwrote the apache directory in /etc but the effect was the same). MySQL Administrator had been used to take a backup of the old database too. In the interests of spring cleaning, I only migrated a few of the old databases from the old system to the new one. In fact, there was an element of such tidying in my mind when I decided to change Linux distribution in the first place; Ubuntu hadn’t been installed from afresh onto the system for a while anyway and some undesirable messages were appearing at update time though they were far from being critical errors.

The web server reinstatement was only part of the software configuration that I was doing and there was a lot of use of apt-get while this was in progress. A rather diverse selection was added: Emacs, NEdit, ClamAV, Shotwell (just make sure that your permissions are sorted first before getting this to use older settings because anything inaccessible just gets cleared out; F-Spot was never there is the first place in my case but it may differ for you), UFRaw, Chrome, Evolution (never have been a user of Mozilla Thunderbird, the default email client on Mint), Dropbox, FileZilla, MySQL Administrator, MySQL Query Browser, NetBeans, POEdit, Banshee (Rhythmbox is what comes with Mint but I replaced it with this), VirtualBox and GParted. This is quite a list and while I maybe should have engaged the services of dpkg to help automate things, I didn’t on this occasion though Mint seems to have a front end for it that does the same sort of thing. Given that the community favour clean installations, it’s little that something like this is on offer in the suite of tools in the standard installation. This is the type of rigmarole that one would not draw on themselves too often.

With desktop tinkering and software installations complete, it was time to do a little more configuration. In order to get my HP laser printer going, I ran hp-setup to download the (proprietary, RMS will not be happy…) driver for it because it otherwise wouldn’t work for me. Fortune was removed from the terminal sessions because I like them to be without such things. To accomplish this, I edited /etc/bash.bashrc and commented out the /usr/games/fortune line before using apt-get to clear the software from my system. Being able to migrate my old Firefox and Evolution profiles, albeit manually, has become another boon. Without doubt, there are more adjustments that I could be making but I am happy to do these as and when I get to them. So far, I have a more than usable system, even if I engaged in more customisation than many users would go doing.

It probably is useful to finish this by sharing my impressions of Linux Mint. What goes without saying is that some things are done differently and that is to be expected. Distribution upgrades are just one example but there are tools available to make clean installations that little bit easier. To my eyes, the desktop looks very clean and fond display is carried over from Ubuntu, not at all a bad thing. That may sound a small matter but it does appear to me that Fedora and openSUSE could learn a thing or too about how to display fonts on screen on their systems. It is the sort of thing that adds the spot of polish that leaves a much better impression. So far, it hasn’t been any hardship to find my way around and I can make the system fit my wants and needs. That it looks set to stay that way is another bonus. We have a lot of change coming in the Linux world with GNOME 3 on the way and Ubuntu’s decision to use Unity as their main desktop environment. While watching both of these developments mature, it looks as if I’ll be happily using Mint. Change can refresh but a bit of stability is good too.

Databases, Hardware, Imaging, Linux, Scripting, Security, Software, Virtualisation, Web

, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,
« Older Entries  

  • As is commonly the case with places like these, all the views that you find expressed on here in postings and articles are mine alone and not those of any organisation with which I have any association, through work or otherwise. With regards to any comments left on the site, I reserve the right to reject any that are inappropriate. Otherwise, whatever is said is the sole responsibility of whoever is leaving the comment.