Adventures & experiences in contemporary technology
While some Linux distros like Fedora install VirtualBox drivers during installation time, I prefer to install the VirtualBox Guest Additions themselves. Before doing this, it is best to remove the virtualbox-guest-additions package from Fedora to avoid conflicts. After that, execute the following command to ensure that all prerequisites for the VirtualBox Guest Additions are in place prior to mounting the VirtualBox Guest Additions ISO image and installing from there:
sudo dnf -y install gcc automake make kernel-headers dkms bzip2 libxcrypt-compat kernel-devel perl
During the installation, you may encounter a message like the following:
ValueError: File context for /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf already defined
This is generated by SELinux so the following commands need executing before the VirtualBox Guest Additions installation is repeated:
sudo semanage fcontext -d /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf
sudo restorecon /opt/VBoxGuestAdditions-<VERSION>/other/mount.vboxsf
Without doing the above step and fixing the preceding error message, I had an issue with mounting of Shared Folders whereby the mount point was set up but no folder contents were displayed. This happened even when my user account was added to the vboxsf group and it proved to be the SELinux context issue that was the cause.
Recent curiosity about Java programming and Groovy scripting got me trying to start up the Eclipse IDE that I had install on my main machine. What I got instead of a successful application startup was a message that included the following:
!MESSAGE Exception launching the Eclipse Platform:
!STACK
java.lang.ClassNotFoundException: org.eclipse.core.runtime.adaptor.EclipseStarter
at java.base/java.net.URLClassLoader.findClass(URLClassLoader.java:466)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:566)
at java.base/java.lang.ClassLoader.loadClass(ClassLoader.java:499)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:626)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:584)
at org.eclipse.equinox.launcher.Main.run(Main.java:1438)
at org.eclipse.equinox.launcher.Main.main(Main.java:1414)
The cause was a mismatch between Eclipse and the installed version of Java that it needed in order to run. After all, the software itself is written in the Java language and the installed version from the usual software repositories was too old for Java 11. The solution turned out to be installing a newer version as a Snap (Ubuntu’s answer to Flatpak). The following command did the needful since Snapd already was running on my machine:
sudo snap install eclipse --classic
The only part of the command that warrants extra comment is the --classic switch since that is needed for a tool like Eclipse that needs to access a host file system. On executing, the software was downloaded from Snapcraft and then installed within its own bundle of dependencies. The latter adds a certain detachment from the underlying Linux installation and ensures that no messages appear because of incompatibilities like the one near the start of this post.
On checking the Site Health page of a WordPress blog, I saw errors that pointed to a problem with its SSL set up. The www subdomain was not included in the site’s certificate and was causing PHP errors as a result though they had no major effect on what visitors saw. Still, it was best to get rid of them so I needed to update the certificate as needed. Execution of a command like the following did the job:
sudo certbot --expand -d existing.com,www.example.com
Using a Let’s Encrypt certificate meant that I could use the certbot command since that already was installed on the server. The --expand and -d switches ensured that the listed domains were added to the certificate to sort out the observed problem. In the above, a dummy domain name is used but this was replaced by the real one to produce the desired effect and make things as they should have been.
For a time, I found that executing the command omv-update in OpenMediaVault 4.0 produced the following Python errors appeared among other more benign messages:
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0xb7099d64>
Traceback (most recent call last):
File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
Exception ignored in: <function WeakValueDictionary.__init__.<locals>.remove at 0xb7099d64>
Traceback (most recent call last):
File "/usr/lib/python3.5/weakref.py", line 117, in remove
TypeError: 'NoneType' object is not callable
Not wanting a failed update, I decided that I needed to investigate this and found that /usr/lib/python3.5/weakref.py required the following updates to lines 109 and 117, respectively:
def remove(wr, selfref=ref(self), _atomic_removal=_remove_dead_weakref):
_atomic_removal(d, wr.key)
To be more clear, the line beginning with “def” is how line 109 should appear while the line beginning with _atomic_removal is how line 117 should appear. Once the required edits were made and the file closed, re-running omv-update revealed that the problem was fixed and that is how things remain at the time of writing.
What you see above is a an error issued by a SAS program like what a colleague at work recently found. The following code will reproduce this so let us walk through the steps to explain a possible cause for this.
The first stage is to create a test dataset containing variables y and x, for the vertical and midpoint axes, respectively, and populating these using a CARDS statement in a data step:
data a;
input y x;
cards;
1 5
3 9
;
run;
Now, we define an axis with tick marks for particular values that will be used as the definition for the midpoint or horizontal axis of the chart:
axis1 order=(1 3);
Then, we try creating the chart using the GCHART procedure that comes with SAS/GRAPH and this is what results in the error message being issued in the program log:
proc gchart data=a;
vbar x / freq=y maxis=axis1;
run;
quit;
The cause is that the midpoint axis tick marks are no included in the data so changing these to the actual values of the x variable removes the message and allows the creation of the required chart. Thus, the AXIS1 statement needs to become the following:
axis1 order=(5 9);
Another solution is to remove the MAXIS option from the VBAR statement and let GCHART be data driven. However, if requirements do not allow this, create a shell dataset with all expected values for the midpoint axis with y set 0 since that is used for presenting frequencies as per the FREQ option in the VBAR statement.
The progress of Windows 10 is something that I have been watching. Early signs have been promising and the most recent live event certainly contained its share of excitement. The subsequent build that was released was another step in the journey though the new Start Menu appears more of a work in progress than it did in previous builds. Keeping up with these advances sometimes steps ahead of VirtualBox support for them and I discovered that again in the last few days. VMware Player seems unaffected so I thought that I’d try a migration of the VirtualBox VM with Windows 10 onto there. In the past, I did something similar with a 32-bit instance of Windows 7 that subsequently got upgraded all the the way up to 8.1 but that may not have been as slick as the latest effort so I thought that I would share it here.
The first step was to export the virtual machine as an OVF appliance and I used File > Export Appliance… only to make a foolish choice regarding the version of OVF. The one that I picked was 2.0 and I subsequently discovered that 1.0 was the better option. The equivalent command line would look like the following (there are two dashes before the ovf10 option below):
VboxManage export [name of VM] -o [name of file].ova --ovf10
VMware have a tool for extracting virtual machines from OVF files that will generate a set of files that will work with Player and other similar products of theirs. It goes under the unsurprising name of OVF Tool and it usefully works from a command line session. When I first tried it with an OVF 2.0 files, I got the following error and it stopped doing anything as a result:
Line 2: Incorrect namespace http://schemas.dmtf.org/ovf/envelope/2 found.
The only solution was to create a version 1.0 file and use a command like the following (it’s a single line though it wraps over two here and there are two dashes before the lax switch):
ovftool --lax [name of file].ova [directory location of VM files]/[name of file].vmx
The --lax option is needed to ensure successful execution even with an OVF 1.0 file as the input. Once I had done this on my Ubuntu GNOME system, the virtual machine could be opened up on VMware Player and I could use the latest build of Windows 10 at full screen, something that was not possible with VirtualBox. This may be how I survey the various builds of the operating that appear before its final edition is launched later this year.
When I recently did my usual system update for the stable version Ubuntu GNOME, there were some updates pertaining to apt and the process failed when I executed the following command:
sudo apt-get upgrade
Usefully, some messages were issued and here’s a flavour:
Setting up apt (0.9.9.1~ubuntu3.1) …
ERROR: Can’t find the archive-keyring
Is the ubuntu-keyring package installed?
dpkg: error processing apt (--configure):
subprocess installed post-installation script returned error exit status 1
Errors were encountered while processing:
apt
E: Sub-process /usr/bin/dpkg returned an error code (1)
Some searching on the web revealed that the problem was that there were no files in /usr/share/keyring when there should have been and I had not removed them myself so I have no idea how they disappeared. Various remedies were tried and any that needed software installed were non-starters because apt was disabled by the lack of keyring files. The workaround that restored things for me was to take a copy of the files in /usr/share/keyring from an Ubuntu GNOME 14.04 installation in a VirtualBox VM and copy them in to the same location in its Ubuntu GNOME 13.10 host. For those without such resources, I have packaged them in a zip file below. Other remedies like Y PPA also were suggested where I was reading but that software package needed installing beforehand so it was little use to me when the likes of Synaptic were disabled. If there are other remedies that do not involve an operating system re-installation, I would like to know about them too as well as possible causes for the file loss in the first place and how to avoid these.
Installing the latest version of Citrix Receiver (13.0 at the time of writing) on 64-bit Ubuntu should be as simple as downloading the required DEB package and double-clicking on the file so that Ubuntu Software Centre can work its magic. Unfortunately, the 64-bit DEB file is faulty so that means that the Ubuntu community how-to guide for Citrix still is needed. In fact, any user of Linux Mint or another distro that uses Ubuntu as its base would do well to have a look at that Ubuntu link.
For sake of completeness, I still am going to let you in on the process that worked for me. Once the DEB file has been downloaded, the first task is to creating a temporary folder where the DEB file’s contents can be extracted:
mkdir ica_temp
With that in place, it then is time to do the extraction and it needs two commands with the second of these need to extract the control file while the first extracts everything else.
sudo dpkg-deb -x icaclient- ica_temp
sudo dpkg-deb --control icaclient- ica_temp/DEBIAN
It is the control file that has been the cause of all the bother because it refers to unavailable dependencies that it really doesn’t need anyway. To open the file for editing, issue the following command:
sudo gedit ica_temp/DEBIAN/control
Then change line 7 (it should begin with Depends:) to: Depends: libc6-i386 (>= 2.7-1), lib32z1, nspluginwrapper. There are other software packages in there that Ubuntu no longer supports and they are not needed anyway. With the edit made and the file saved, the next step is to build a new DEB package with the corrected control file:
dpkg -b ica_temp icaclient-modified.deb
Once you have the package, the next step is to install it using the following command:
sudo dpkg -i icaclient-modified.deb
If it fails, then you have missing dependencies and the following command should sort these before a re-run of the above command again:
sudo apt-get install libmotif4:i386 nspluginwrapper lib32z1 libc6-i386
With Citrix Receiver installed, there is one more thing that is needed before you can use it freely. This is to put Thawte security certificate files into /opt/Citrix/ICAClient/keystore/cacerts. What I had not realised until recently was that many of these already are in /usr/share/ca-certificates/mozilla and linking to them with the following command makes them available to Citrix receiver:
sudo ln -s /usr/share/ca-certificates/mozilla/* /opt/Citrix/ICAClient/keystore/cacerts/
Another approach is to download the Thawte certificates and extract the archive to /tmp/. From there they can be copied to /opt/Citrix/ICAClient/keystore/cacerts and I copied the Thawte Personal Premium certificate as follows:
sudo cp /tmp/Thawte Root Certificates/Thawte Personal Premium CA/Thawte Personal Premium CA.cer /opt/Citrix/ICAClient/keystore/cacerts/
Until I found out about what was in the Mozilla folder, I simply picked out the certificate mentioned in the Citrix error message and copied it over like the above. Of course, all of this may seem like a lot of work to those who are non-tinkerers and I have added a repaired 64-bit DEB package that incorporates all of the above and should not need any further intervention aside from installing it using GDebi, Ubuntu’s Software Centre, dpkg or anything else that does what’s needed.
This is another posting in an occasional series on SAS error and warning messages that aren’t as clear as they’d need to be. What produced the message was my creation of a control data set that I then wished to use to create a data-driven (in)format. It was the PROC FORMAT step that issued the message and I got no (in)format created. However, there were no duplicate entries in the control data set as the message suggested to me so a little more investigation was needed.
What that revealed was that there might be one variable missing from the data set that I needed to have. The SAS documentation has FMTNAME, START and LABEL as compulsory variables with they containing the following: format name, initial value and displayed value. My intention was to create a numeric code variable for one containing character strings using my data-driven format with then numbers specified within a character variable as it should be. What was missing then was TYPE.
This variable can be one of the following values: C for character formats, I for numeric informats, J for character informats, N for numeric formats and P for picture formats. Due to it being a conversion from character values to numeric ones, I set the values of TYPE to I and used an input function to do the required operations. The code for successfully creating the informat is below:
proc sql noprint;
create table tpts as
select distinct "_vstpt" as fmtname,
"I" as type,
vstpt as start,
vstpt as end,
strip(put(vstptnum,best.)) as label
from test
where not missing(vstptnum);
quit;
proc format library=work cntlin=tpts;
run;
quit;
Though I didn’t need to do it, I added an END variable too for sake of completeness. In this case, the range is such that its start and end are the same and there are cases where that will not be the case though I am not dwelling on those.
Sometimes, SAS messages are not all that they seem and a number of them are issued from PROC SQL when something goes awry with your code. In fact, I got a message like the above when ordering the results of the join using a variable that didn’t exist in either of the datasets that were joined. This type of thing has been around for a while (I have been using SAS since version 6.11 and it was there then) and it amazes me that we haven’t seen a better message in more recent versions of SAS; it was SAS 9.2 where I saw it most recently.
proc sql noprint;
select a.yy, a.yyy, b.zz
from a left join b
on a.yy=b.yy
order by xx;
quit;